Variant report

Variant	rs13336715
Chromosome Location	chr16:81480499-81480500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81480171..81484417-chr16:81492553..81495426,4	MCF-7	breast:
2	chr16:81347539..81350872-chr16:81478035..81482618,4	MCF-7	breast:
3	chr16:81479233..81481383-chr16:81669168..81671118,2	MCF-7	breast:
4	chr16:81480040..81482006-chr16:81671001..81673698,2	K562	blood:
5	chr16:81480210..81481743-chr16:81584414..81586701,2	K562	blood:
6	chr16:81480285..81482687-chr16:81557234..81559498,2	K562	blood:
7	chr16:81477150..81481169-chr16:81642368..81644770,3	MCF-7	breast:
8	chr16:81479204..81482002-chr16:81562835..81564936,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction
ENSG00000261609	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs13330047	1.00[AMR][1000 genomes]
rs13330236	1.00[AMR][1000 genomes]
rs13330460	1.00[AMR][1000 genomes]
rs13330968	1.00[AMR][1000 genomes]
rs13331648	1.00[AMR][1000 genomes]
rs13333096	1.00[AMR][1000 genomes]
rs13334454	1.00[AMR][1000 genomes]
rs13335545	1.00[AMR][1000 genomes]
rs13336792	1.00[AMR][1000 genomes]
rs13338579	1.00[AMR][1000 genomes]
rs16955449	1.00[AMR][1000 genomes]
rs28412656	1.00[AMR][1000 genomes]
rs28418533	1.00[AMR][1000 genomes]
rs28436066	1.00[AMR][1000 genomes]
rs28438989	1.00[AMR][1000 genomes]
rs28493867	1.00[AMR][1000 genomes]
rs28572501	1.00[AMR][1000 genomes]
rs28594283	1.00[AMR][1000 genomes]
rs28649617	1.00[AMR][1000 genomes]
rs28669745	1.00[AMR][1000 genomes]
rs28711634	1.00[AMR][1000 genomes]
rs28763301	1.00[AMR][1000 genomes]
rs2927303	1.00[AMR][1000 genomes]
rs2927306	1.00[AMR][1000 genomes]
rs2927309	1.00[AMR][1000 genomes]
rs2927310	1.00[AMR][1000 genomes]
rs2966089	1.00[AMR][1000 genomes]
rs2966096	1.00[AMR][1000 genomes]
rs56850891	1.00[AMR][1000 genomes]
rs73594494	1.00[AMR][1000 genomes]
rs73594496	1.00[AMR][1000 genomes]
rs73596412	1.00[AMR][1000 genomes]
rs73596428	1.00[AMR][1000 genomes]
rs73596440	1.00[AMR][1000 genomes]
rs73596462	1.00[AMR][1000 genomes]
rs9921409	1.00[AMR][1000 genomes]
rs9923475	1.00[AMR][1000 genomes]
rs9925710	1.00[AMR][1000 genomes]
rs9925814	1.00[AMR][1000 genomes]
rs9927474	1.00[AMR][1000 genomes]
rs9928818	1.00[AMR][1000 genomes]
rs9929135	1.00[AMR][1000 genomes]
rs9931473	1.00[AMR][1000 genomes]
rs9932717	1.00[AMR][1000 genomes]
rs9933163	1.00[AMR][1000 genomes]
rs9934014	1.00[AMR][1000 genomes]
rs9934020	1.00[AMR][1000 genomes]
rs9934846	1.00[AMR][1000 genomes]
rs9934867	1.00[AMR][1000 genomes]
rs9935244	1.00[AMR][1000 genomes]
rs9935348	1.00[AMR][1000 genomes]
rs9935375	1.00[AMR][1000 genomes]
rs9935617	1.00[AMR][1000 genomes]
rs9935646	1.00[AMR][1000 genomes]
rs9936412	1.00[AMR][1000 genomes]
rs9937004	1.00[AMR][1000 genomes]
rs9937189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81477400-81481000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr16:81477600-81480600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:81477600-81480800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:81477600-81481800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr16:81477800-81480600	Active TSS	Small Intestine	intestine
6	chr16:81477800-81480800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr16:81477800-81480800	Active TSS	Ovary	ovary
8	chr16:81477800-81481000	Active TSS	Fetal Brain Female	brain
9	chr16:81477800-81481200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:81477800-81481600	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr16:81478000-81480600	Active TSS	H1 Cell Line	embryonic stem cell
12	chr16:81478000-81480600	Active TSS	Left Ventricle	heart
13	chr16:81478000-81480600	Active TSS	Pancreas	Pancrea
14	chr16:81478000-81480600	Active TSS	Sigmoid Colon	Sigmoid Colon
15	chr16:81478000-81480800	Active TSS	Psoas Muscle	Psoas
16	chr16:81478000-81481000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:81478000-81481000	Active TSS	Esophagus	oesophagus
18	chr16:81478000-81481000	Active TSS	Fetal Intestine Large	intestine
19	chr16:81478000-81481000	Active TSS	Fetal Intestine Small	intestine
20	chr16:81478000-81481000	Active TSS	Lung	lung
21	chr16:81478000-81481000	Active TSS	HMEC	breast
22	chr16:81478000-81481200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:81478600-81480600	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr16:81478800-81480800	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr16:81478800-81480800	Active TSS	Brain Anterior Caudate	brain
26	chr16:81478800-81480800	Active TSS	Colon Smooth Muscle	Colon
27	chr16:81478800-81480800	Active TSS	Duodenum Mucosa	Duodenum
28	chr16:81478800-81481000	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr16:81478800-81481000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr16:81478800-81481000	Active TSS	Brain Angular Gyrus	brain
31	chr16:81478800-81481000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:81478800-81481000	Active TSS	NHDF-Ad	bronchial
33	chr16:81478800-81481000	Active TSS	NHEK	skin
34	chr16:81478800-81481400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:81478800-81481400	Active TSS	Fetal Kidney	kidney
36	chr16:81479000-81480800	Active TSS	Stomach Mucosa	stomach
37	chr16:81479000-81481400	Bivalent/Poised TSS	HepG2	liver
38	chr16:81479000-81481600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr16:81479000-81482000	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr16:81479200-81480800	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr16:81479200-81480800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr16:81479200-81480800	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr16:81479200-81481000	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr16:81479200-81481200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr16:81479400-81480600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr16:81479400-81481000	Flanking Active TSS	Dnd41	blood
47	chr16:81479400-81481200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr16:81479400-81481200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr16:81479400-81481200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr16:81479400-81481400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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