Variant report

Variant	rs9929135
Chromosome Location	chr16:81438141-81438142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81437645..81439695-chr16:81483087..81485039,2	MCF-7	breast:
2	chr16:81437986..81439696-chr16:81476671..81479006,2	MCF-7	breast:
3	chr16:81435943..81438207-chr16:81730859..81732900,2	MCF-7	breast:
4	chr16:81437532..81439283-chr16:81753997..81755873,2	MCF-7	breast:
5	chr16:81299078..81302061-chr16:81436306..81439143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13330047	1.00[AMR][1000 genomes]
rs13330236	1.00[AMR][1000 genomes]
rs13330460	1.00[AMR][1000 genomes]
rs13330968	1.00[AMR][1000 genomes]
rs13331534	1.00[AMR][1000 genomes]
rs13331648	1.00[AMR][1000 genomes]
rs13331946	1.00[AMR][1000 genomes]
rs13333096	1.00[AMR][1000 genomes]
rs13334454	1.00[AMR][1000 genomes]
rs13335545	1.00[AMR][1000 genomes]
rs13336715	1.00[AMR][1000 genomes]
rs13336792	1.00[AMR][1000 genomes]
rs13338110	1.00[AMR][1000 genomes]
rs13338579	1.00[AMR][1000 genomes]
rs16955449	1.00[AMR][1000 genomes]
rs28412656	1.00[AMR][1000 genomes]
rs28418533	1.00[AMR][1000 genomes]
rs28436066	1.00[AMR][1000 genomes]
rs28438989	1.00[AMR][1000 genomes]
rs28493867	1.00[AMR][1000 genomes]
rs28572501	1.00[AMR][1000 genomes]
rs28594283	1.00[AMR][1000 genomes]
rs28649617	1.00[AMR][1000 genomes]
rs28669745	1.00[AMR][1000 genomes]
rs28711634	1.00[AMR][1000 genomes]
rs28763301	1.00[AMR][1000 genomes]
rs2927303	1.00[AMR][1000 genomes]
rs2927306	1.00[AMR][1000 genomes]
rs2927309	1.00[AMR][1000 genomes]
rs2927310	1.00[AMR][1000 genomes]
rs2966089	1.00[AMR][1000 genomes]
rs2966096	1.00[AMR][1000 genomes]
rs56850891	1.00[AMR][1000 genomes]
rs73594494	1.00[AMR][1000 genomes]
rs73594496	1.00[AMR][1000 genomes]
rs73596412	1.00[AMR][1000 genomes]
rs73596428	1.00[AMR][1000 genomes]
rs73596440	1.00[AMR][1000 genomes]
rs9921409	1.00[AMR][1000 genomes]
rs9923475	1.00[AMR][1000 genomes]
rs9925710	1.00[AMR][1000 genomes]
rs9925814	1.00[AMR][1000 genomes]
rs9927474	1.00[AMR][1000 genomes]
rs9928818	1.00[AMR][1000 genomes]
rs9931473	1.00[AMR][1000 genomes]
rs9932717	1.00[AMR][1000 genomes]
rs9933163	1.00[AMR][1000 genomes]
rs9934014	1.00[AMR][1000 genomes]
rs9934020	1.00[AMR][1000 genomes]
rs9934846	1.00[AMR][1000 genomes]
rs9934867	1.00[AMR][1000 genomes]
rs9935244	1.00[AMR][1000 genomes]
rs9935348	1.00[AMR][1000 genomes]
rs9935375	1.00[AMR][1000 genomes]
rs9935617	1.00[AMR][1000 genomes]
rs9935646	1.00[AMR][1000 genomes]
rs9936412	1.00[AMR][1000 genomes]
rs9937004	1.00[AMR][1000 genomes]
rs9937189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81435400-81439200	Weak transcription	HSMM	muscle
2	chr16:81437200-81438400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:81437200-81441400	Enhancers	HMEC	breast
4	chr16:81437400-81438200	Flanking Active TSS	Hela-S3	cervix
5	chr16:81437400-81438400	Flanking Active TSS	A549	lung
6	chr16:81437400-81438400	Enhancers	NH-A	brain
7	chr16:81437600-81438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:81437600-81438200	Flanking Bivalent TSS/Enh	HepG2	liver
9	chr16:81437600-81438400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:81437600-81438800	Enhancers	Placenta	Placenta
11	chr16:81437600-81439200	Weak transcription	NHDF-Ad	bronchial
12	chr16:81437600-81439400	Weak transcription	HSMMtube	muscle
13	chr16:81437600-81439600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr16:81437600-81440400	Weak transcription	NHLF	lung
15	chr16:81437600-81440800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr16:81437600-81440800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:81437600-81441400	Enhancers	NHEK	skin
18	chr16:81437600-81444400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81437800-81438400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr16:81437800-81439000	Weak transcription	Fetal Intestine Large	intestine
21	chr16:81437800-81439000	Weak transcription	HUVEC	blood vessel
22	chr16:81437800-81439200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr16:81437800-81439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:81437800-81439200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr16:81437800-81439200	Weak transcription	Fetal Intestine Small	intestine
26	chr16:81437800-81439200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr16:81437800-81439200	Weak transcription	Osteobl	bone
28	chr16:81437800-81439400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr16:81437800-81439400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr16:81437800-81439400	Weak transcription	Pancreas	Pancrea
31	chr16:81437800-81439400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:81437800-81440800	Weak transcription	Esophagus	oesophagus
33	chr16:81437800-81441400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:81437800-81442800	Weak transcription	Gastric	stomach
35	chr16:81437800-81444400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr16:81437800-81444400	Weak transcription	Fetal Thymus	thymus
37	chr16:81437800-81447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr16:81438000-81439200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr16:81438000-81439200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:81438000-81439200	Weak transcription	Stomach Mucosa	stomach
41	chr16:81438000-81439400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr16:81438000-81440400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr16:81438000-81440800	Weak transcription	K562	blood
44	chr16:81438000-81444400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr16:81438000-81449600	Weak transcription	Right Atrium	heart

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