Variant report
| Variant | rs1333676 |
|---|---|
| Chromosome Location | chr13:93204192-93204193 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1180898 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1180900 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1180903 | 0.87[EUR][1000 genomes] |
| rs1629541 | 0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2149059 | 0.85[EUR][1000 genomes] |
| rs2209832 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2769298 | 0.85[EUR][1000 genomes] |
| rs2780743 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs373049 | 0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4773689 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7319531 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7350692 | 0.85[EUR][1000 genomes] |
| rs7992204 | 0.91[EUR][1000 genomes] |
| rs7993864 | 0.91[EUR][1000 genomes] |
| rs9523689 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9523690 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9523691 | 0.91[EUR][1000 genomes] |
| rs9523692 | 0.91[EUR][1000 genomes] |
| rs9523693 | 0.91[EUR][1000 genomes] |
| rs9523701 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9556184 | 0.84[EUR][1000 genomes] |
| rs9556188 | 0.91[EUR][1000 genomes] |
| rs9561073 | 0.84[EUR][1000 genomes] |
| rs9561074 | 0.84[EUR][1000 genomes] |
| rs9561075 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9561076 | 0.91[EUR][1000 genomes] |
| rs9561077 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9561078 | 0.88[EUR][1000 genomes] |
| rs9584032 | 0.84[EUR][1000 genomes] |
| rs974419 | 0.83[EUR][1000 genomes] |
| rs993485 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471168 | chr13:93138577-93208593 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900904 | chr13:93138577-93208593 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900905 | chr13:93138577-93211339 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv562728 | chr13:93142706-93208593 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv456069 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv562729 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv818987 | chr13:93201002-93208593 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93204000-93204200 | Enhancers | Pancreatic Islets | Pancreatic Islet |
