Variant report

Variant	rs7319531
Chromosome Location	chrX:80026110-80026111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1180898	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1180900	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1180903	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1333676	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1629541	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149059	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2209832	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2769298	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2780743	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs373049	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4773689	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7350692	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7992204	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7993864	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9523689	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523690	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523691	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523692	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523693	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9523701	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556184	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9556188	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561073	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561074	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561075	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561076	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561077	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561078	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9584032	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs974419	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993485	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33127	chrX:79989618-80370141	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79965600-80034200	Weak transcription	Left Ventricle	heart
2	chrX:79999800-80032000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chrX:80000400-80045800	Weak transcription	Dnd41	blood
4	chrX:80006400-80030200	Weak transcription	Primary B cells from cord blood	blood
5	chrX:80017800-80047200	Weak transcription	Primary B cells from peripheral blood	blood
6	chrX:80019000-80045400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chrX:80019200-80044600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chrX:80019400-80032200	Weak transcription	Primary hematopoietic stem cells	blood
9	chrX:80019400-80055000	Weak transcription	Primary T cells from cord blood	blood
10	chrX:80020000-80063000	Weak transcription	Thymus	Thymus
11	chrX:80020200-80063600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chrX:80020800-80062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chrX:80021000-80031600	Weak transcription	Ovary	ovary
14	chrX:80021000-80062600	Weak transcription	A549	lung
15	chrX:80021200-80028400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chrX:80021200-80040400	Weak transcription	Hela-S3	cervix
17	chrX:80021200-80063000	Weak transcription	Osteobl	bone
18	chrX:80022600-80063600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chrX:80022800-80029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chrX:80022800-80040000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chrX:80022800-80044200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chrX:80022800-80045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chrX:80022800-80063000	Weak transcription	Fetal Intestine Small	intestine
24	chrX:80023000-80046600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chrX:80023600-80036000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chrX:80023800-80037600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chrX:80023800-80045400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chrX:80025200-80026200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chrX:80025600-80063000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links