Variant report

Variant	rs13338786
Chromosome Location	chr16:79908955-79908956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79902555..79905597-chr16:79906895..79909877,3	K562	blood:
2	chr16:79902555..79905597-chr16:79906895..79909877,5	K562	blood:
3	chr16:79908657..79911589-chr16:79915100..79917663,2	K562	blood:
4	chr16:79905342..79909928-chr16:79910179..79915093,7	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11641084	0.83[AMR][1000 genomes]
rs11641371	0.80[AMR][1000 genomes]
rs11644400	0.81[AMR][1000 genomes]
rs11861301	0.89[ASN][1000 genomes]
rs12103233	0.83[AMR][1000 genomes]
rs13330024	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13331920	0.88[AMR][1000 genomes]
rs13332408	0.82[AMR][1000 genomes]
rs16951648	0.83[AMR][1000 genomes]
rs28368255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28384289	0.81[ASN][1000 genomes]
rs28580467	0.83[AMR][1000 genomes]
rs28581385	0.81[AMR][1000 genomes]
rs28613729	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28623477	0.83[AMR][1000 genomes]
rs4078173	0.83[AMR][1000 genomes]
rs4473202	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4627365	0.80[AMR][1000 genomes]
rs59520813	0.83[AMR][1000 genomes]
rs60244203	0.89[ASN][1000 genomes]
rs60280876	0.83[AMR][1000 genomes]
rs60715095	0.83[AMR][1000 genomes]
rs7184127	0.85[CEU][hapmap]
rs7188156	0.81[AMR][1000 genomes]
rs7189003	0.83[AMR][1000 genomes]
rs7193332	0.83[AMR][1000 genomes]
rs7195432	0.82[CEU][hapmap]
rs7197544	0.83[AMR][1000 genomes]
rs7203258	0.83[AMR][1000 genomes]
rs7204126	0.83[AMR][1000 genomes]
rs7205649	0.83[AMR][1000 genomes]
rs73574100	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74038093	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8054786	0.81[AMR][1000 genomes]
rs9925132	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv906993	chr16:79883850-79923310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv34919	chr16:79889959-79923310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv457555	chr16:79893737-79926134	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv471100	chr16:79893737-79926134	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv573292	chr16:79893737-79926134	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2757646	chr16:79894964-79923310	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2758662	chr16:79894964-79923310	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv457556	chr16:79896825-79926134	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv573293	chr16:79896825-79926134	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3374148	chr16:79907351-79911649	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79904800-79911200	Weak transcription	Spleen	Spleen
2	chr16:79907400-79909200	Enhancers	Duodenum Mucosa	Duodenum
3	chr16:79908000-79910800	Enhancers	K562	blood
4	chr16:79908200-79909000	Enhancers	Small Intestine	intestine
5	chr16:79908400-79909600	Enhancers	Esophagus	oesophagus
6	chr16:79908400-79910200	Enhancers	GM12878-XiMat	blood
7	chr16:79908800-79909400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:79908800-79909400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:79908800-79931400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links