Variant report

Variant	rs28580467
Chromosome Location	chr16:79934279-79934280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79933233..79934996-chr16:79946812..79949089,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11641084	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11641245	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11641371	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644393	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11644400	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11646139	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11647905	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11648875	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11649114	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12103233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13330024	0.83[AMR][1000 genomes]
rs13330604	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13331920	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13335599	0.80[ASN][1000 genomes]
rs13338786	0.83[AMR][1000 genomes]
rs16951648	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28368255	0.83[AMR][1000 genomes]
rs28384289	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28470287	0.80[ASN][1000 genomes]
rs28555498	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28581385	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28623477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34008782	0.80[ASN][1000 genomes]
rs35286975	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4077451	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4078173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078174	0.84[ASN][1000 genomes]
rs4291913	0.80[ASN][1000 genomes]
rs4325578	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4548890	0.95[ASN][1000 genomes]
rs4627365	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58323452	0.85[ASN][1000 genomes]
rs59520813	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60280876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60715095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188156	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7189003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7191101	0.84[ASN][1000 genomes]
rs7191612	0.83[ASN][1000 genomes]
rs7193332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195512	0.95[ASN][1000 genomes]
rs7197544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7201648	0.80[ASN][1000 genomes]
rs7203258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7204126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7205649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73574100	0.83[AMR][1000 genomes]
rs74038093	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8053565	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8054786	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8058927	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8060495	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9925120	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9925132	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9925837	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9928026	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9935686	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79929000-79934400	Enhancers	Fetal Intestine Small	intestine
2	chr16:79929200-79934600	Enhancers	Fetal Intestine Large	intestine
3	chr16:79929400-79934400	Enhancers	Duodenum Mucosa	Duodenum
4	chr16:79931600-79934800	Weak transcription	Right Atrium	heart
5	chr16:79931800-79936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:79932200-79934400	Enhancers	HepG2	liver
7	chr16:79932200-79936400	Weak transcription	Osteobl	bone
8	chr16:79932600-79934800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:79933600-79934400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:79933800-79934400	Enhancers	Ovary	ovary
11	chr16:79934000-79934600	Enhancers	Placenta	Placenta
12	chr16:79934200-79936600	Weak transcription	NH-A	brain

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