Variant report

Variant	rs9925837
Chromosome Location	chr16:79927303-79927304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79918519..79921940-chr16:79923355..79927904,4	MCF-7	breast:
2	chr16:79926658..79928778-chr16:79932145..79933680,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11641084	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11641245	0.82[EUR][1000 genomes]
rs11641371	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11644393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11644400	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11646139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11647905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11649114	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12103233	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13330604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13331920	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16951648	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28384289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28555498	0.81[ASN][1000 genomes]
rs28580467	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28581385	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28623477	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35286975	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4077451	0.83[EUR][1000 genomes]
rs4078173	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4548890	0.80[ASN][1000 genomes]
rs4627365	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58323452	0.99[ASN][1000 genomes]
rs59520813	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60280876	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60715095	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7188156	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7189003	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7193332	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7195512	0.80[ASN][1000 genomes]
rs7197544	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7203258	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7204126	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7205649	0.84[AMR][1000 genomes]
rs73574100	0.81[ASN][1000 genomes]
rs74038093	0.83[ASN][1000 genomes]
rs8053565	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8054786	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8058927	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8060495	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9925120	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9925132	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9928026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935686	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79925800-79929200	Weak transcription	Fetal Intestine Large	intestine
3	chr16:79926800-79927400	Enhancers	K562	blood
4	chr16:79927000-79927800	Enhancers	HepG2	liver
5	chr16:79927200-79929000	Weak transcription	Liver	Liver

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