Variant report

Variant	rs13335599
Chromosome Location	chr16:79934580-79934581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79930657..79933146-chr16:79934567..79938494,4	K562	blood:
2	chr16:79933233..79934996-chr16:79946812..79949089,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11641245	0.93[ASN][1000 genomes]
rs11641621	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11641754	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11645023	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11646334	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11648875	0.93[ASN][1000 genomes]
rs13333499	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13337624	0.81[ASN][1000 genomes]
rs28470287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580467	0.80[ASN][1000 genomes]
rs28680341	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28711066	0.84[ASN][1000 genomes]
rs34008782	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286975	0.93[ASN][1000 genomes]
rs4078173	0.80[ASN][1000 genomes]
rs4078174	0.96[ASN][1000 genomes]
rs4274451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4291913	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325578	0.94[ASN][1000 genomes]
rs4378627	0.84[ASN][1000 genomes]
rs4548890	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4627365	0.80[ASN][1000 genomes]
rs59520813	0.80[ASN][1000 genomes]
rs60280876	0.80[ASN][1000 genomes]
rs60715095	0.80[ASN][1000 genomes]
rs6564712	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7188156	0.83[ASN][1000 genomes]
rs7188391	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7188674	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7193332	0.80[ASN][1000 genomes]
rs7194565	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7195512	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7198844	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7201648	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925050	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9928156	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9930360	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79929200-79934600	Enhancers	Fetal Intestine Large	intestine
2	chr16:79931600-79934800	Weak transcription	Right Atrium	heart
3	chr16:79931800-79936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:79932200-79936400	Weak transcription	Osteobl	bone
5	chr16:79932600-79934800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:79934000-79934600	Enhancers	Placenta	Placenta
7	chr16:79934200-79936600	Weak transcription	NH-A	brain
8	chr16:79934400-79934600	Flanking Active TSS	HepG2	liver
9	chr16:79934400-79936200	Weak transcription	Ovary	ovary

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