Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:79936315..79939277-chr16:79940790..79944311,3	MCF-7	breast:
2	chr16:79930657..79933146-chr16:79935922..79938494,3	K562	blood:
3	chr16:79930657..79933146-chr16:79934567..79938494,4	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11641245	0.96[ASN][1000 genomes]
rs11641621	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11641754	0.92[ASN][1000 genomes]
rs11645023	0.89[ASN][1000 genomes]
rs11646334	0.91[ASN][1000 genomes]
rs11648875	0.96[ASN][1000 genomes]
rs13333499	0.92[ASN][1000 genomes]
rs13335599	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28470287	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28680341	0.90[ASN][1000 genomes]
rs28711066	0.81[ASN][1000 genomes]
rs34008782	0.97[ASN][1000 genomes]
rs35286975	0.96[ASN][1000 genomes]
rs4078174	0.93[ASN][1000 genomes]
rs4274451	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4291913	0.97[ASN][1000 genomes]
rs4325578	0.95[ASN][1000 genomes]
rs4378627	0.81[ASN][1000 genomes]
rs4548890	0.81[ASN][1000 genomes]
rs6564712	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188156	0.86[ASN][1000 genomes]
rs7188674	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7194565	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7195512	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7198844	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7201648	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9925050	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9928156	0.88[ASN][1000 genomes]
rs9930360	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79936200-79938400	Enhancers	Ovary	ovary
2	chr16:79937200-79939600	Enhancers	Fetal Lung	lung
3	chr16:79938000-79943400	Weak transcription	Fetal Stomach	stomach

Quick Search: