Variant report

Variant	rs11646334
Chromosome Location	chr16:79926782-79926783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79918519..79921940-chr16:79923355..79927904,4	MCF-7	breast:
2	chr16:79926658..79928778-chr16:79932145..79933680,2	MCF-7	breast:
3	chr16:79919007..79921111-chr16:79925288..79927075,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11639862	0.81[ASN][1000 genomes]
rs11641099	0.83[CHB][hapmap]
rs11641245	0.86[ASN][1000 genomes]
rs11641621	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11641754	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11645023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11648875	0.86[ASN][1000 genomes]
rs11649129	0.92[CHB][hapmap]
rs13333499	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13335599	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13337624	0.85[ASN][1000 genomes]
rs16951534	0.92[CHB][hapmap]
rs28470287	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28680341	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28711066	0.89[ASN][1000 genomes]
rs34008782	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35286975	0.86[ASN][1000 genomes]
rs4078174	0.90[ASN][1000 genomes]
rs4274451	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4291913	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4325578	0.87[ASN][1000 genomes]
rs4378627	0.88[ASN][1000 genomes]
rs4548890	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6564712	0.91[ASN][1000 genomes]
rs7188391	0.91[ASN][1000 genomes]
rs7188674	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7194565	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7195432	0.89[CHB][hapmap]
rs7195512	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7198844	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7201648	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9925050	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9928156	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9930360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11646334	ZFP1	cis	cerebellum	SCAN
rs11646334	TMEM231	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79925800-79926800	Weak transcription	K562	blood
3	chr16:79925800-79929200	Weak transcription	Fetal Intestine Large	intestine
4	chr16:79926400-79927200	Enhancers	Liver	Liver
5	chr16:79926600-79927000	Weak transcription	HepG2	liver

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