Variant report

Variant	rs11648875
Chromosome Location	chr16:79939049-79939050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79936315..79939277-chr16:79940790..79944311,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11641084	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11641245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11641371	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11641621	0.86[ASN][1000 genomes]
rs11641754	0.87[ASN][1000 genomes]
rs11644400	0.81[AMR][1000 genomes]
rs11645023	0.84[ASN][1000 genomes]
rs11646334	0.86[ASN][1000 genomes]
rs12103233	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13331920	0.98[EUR][1000 genomes]
rs13333499	0.87[ASN][1000 genomes]
rs13335599	0.93[ASN][1000 genomes]
rs16951648	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28470287	0.93[ASN][1000 genomes]
rs28555498	0.83[EUR][1000 genomes]
rs28580467	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28581385	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28623477	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28680341	0.85[ASN][1000 genomes]
rs34008782	0.93[ASN][1000 genomes]
rs35286975	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077451	0.81[EUR][1000 genomes]
rs4078173	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4078174	0.97[ASN][1000 genomes]
rs4274451	0.95[ASN][1000 genomes]
rs4291913	0.93[ASN][1000 genomes]
rs4325578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4627365	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59520813	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60280876	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60715095	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6564712	0.96[ASN][1000 genomes]
rs7188156	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7188391	0.96[ASN][1000 genomes]
rs7188674	0.85[ASN][1000 genomes]
rs7189003	0.91[EUR][1000 genomes]
rs7193332	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7194565	0.85[ASN][1000 genomes]
rs7197544	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7198844	0.85[ASN][1000 genomes]
rs7201648	0.93[ASN][1000 genomes]
rs7203258	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7204126	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7205649	0.99[EUR][1000 genomes]
rs8053565	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8054786	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8058927	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8060495	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9925050	0.96[ASN][1000 genomes]
rs9925120	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9925132	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9928156	0.83[ASN][1000 genomes]
rs9930360	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11648875	ATMIN	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79937200-79939600	Enhancers	Fetal Lung	lung
2	chr16:79938000-79943400	Weak transcription	Fetal Stomach	stomach
3	chr16:79938400-79949200	Weak transcription	Ovary	ovary
4	chr16:79938800-79939200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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