Variant report

Variant	rs34008782
Chromosome Location	chr16:79932265-79932266
allele	AG/CA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79926658..79928778-chr16:79932145..79933680,2	MCF-7	breast:
2	chr16:79930002..79932822-chr16:79943489..79945952,3	K562	blood:
3	chr16:79930657..79933146-chr16:79934567..79938494,4	K562	blood:
4	chr16:79930657..79933146-chr16:79935922..79938494,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11641245	0.93[ASN][1000 genomes]
rs11641621	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11641754	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11645023	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11646334	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11648875	0.93[ASN][1000 genomes]
rs13333499	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13335599	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337624	0.81[ASN][1000 genomes]
rs28470287	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580467	0.80[ASN][1000 genomes]
rs28680341	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28711066	0.84[ASN][1000 genomes]
rs35286975	0.93[ASN][1000 genomes]
rs4078173	0.80[ASN][1000 genomes]
rs4078174	0.96[ASN][1000 genomes]
rs4274451	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4291913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325578	0.94[ASN][1000 genomes]
rs4378627	0.84[ASN][1000 genomes]
rs4548890	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4627365	0.80[ASN][1000 genomes]
rs59520813	0.80[ASN][1000 genomes]
rs60280876	0.80[ASN][1000 genomes]
rs60715095	0.80[ASN][1000 genomes]
rs6564712	0.97[ASN][1000 genomes]
rs7188156	0.83[ASN][1000 genomes]
rs7188391	0.97[ASN][1000 genomes]
rs7188674	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7193332	0.80[ASN][1000 genomes]
rs7194565	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7195512	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7198844	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7201648	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925050	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9928156	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9930360	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79929000-79933400	Enhancers	Liver	Liver
2	chr16:79929000-79934400	Enhancers	Fetal Intestine Small	intestine
3	chr16:79929200-79934600	Enhancers	Fetal Intestine Large	intestine
4	chr16:79929400-79934000	Weak transcription	Small Intestine	intestine
5	chr16:79929400-79934400	Enhancers	Duodenum Mucosa	Duodenum
6	chr16:79931400-79932400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:79931600-79934800	Weak transcription	Right Atrium	heart
8	chr16:79931800-79933400	Weak transcription	A549	lung
9	chr16:79931800-79933800	Weak transcription	Ovary	ovary
10	chr16:79931800-79933800	Enhancers	K562	blood
11	chr16:79931800-79936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:79932000-79933200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:79932200-79934000	Weak transcription	NH-A	brain
14	chr16:79932200-79934400	Enhancers	HepG2	liver
15	chr16:79932200-79936400	Weak transcription	Osteobl	bone

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