Variant report

Variant	rs1333968
Chromosome Location	chr6:71424364-71424365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71422116..71424990-chr6:71593570..71595657,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1024211	0.84[EUR][1000 genomes]
rs10428835	0.91[EUR][1000 genomes]
rs10455229	0.85[EUR][1000 genomes]
rs10498874	0.81[EUR][1000 genomes]
rs10498875	0.81[EUR][1000 genomes]
rs10498876	0.82[ASW][hapmap];0.81[CEU][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs10738047	0.90[EUR][1000 genomes]
rs10755541	0.80[EUR][1000 genomes]
rs10806635	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10806636	0.80[YRI][hapmap];0.80[EUR][1000 genomes]
rs10945239	0.80[EUR][1000 genomes]
rs10945243	0.80[EUR][1000 genomes]
rs10945246	0.82[ASW][hapmap];0.81[CEU][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes]
rs10945247	0.82[ASW][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs10945248	0.80[EUR][1000 genomes]
rs10945261	0.84[EUR][1000 genomes]
rs12190987	0.90[EUR][1000 genomes]
rs12191175	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12191208	0.80[EUR][1000 genomes]
rs12197239	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs12207501	0.80[EUR][1000 genomes]
rs12209357	0.81[EUR][1000 genomes]
rs12211207	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12212629	0.80[EUR][1000 genomes]
rs12215187	0.84[EUR][1000 genomes]
rs12215467	0.81[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs12215757	0.81[EUR][1000 genomes]
rs12215835	0.81[CEU][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs12215915	0.81[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs1333964	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1333967	0.82[ASW][hapmap];0.81[CEU][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1577109	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1577110	0.80[EUR][1000 genomes]
rs2347431	0.81[EUR][1000 genomes]
rs2347432	0.81[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2460687	0.83[EUR][1000 genomes]
rs2460689	0.81[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs2474913	0.81[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs2474921	0.86[GIH][hapmap]
rs2504756	0.81[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs4282370	0.80[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes]
rs4410690	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4580826	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs4613778	0.88[ASW][hapmap];0.81[CEU][hapmap];0.89[LWK][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4706462	0.88[ASW][hapmap];0.81[CEU][hapmap];0.98[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4706464	0.81[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs4707847	0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4707855	0.82[ASW][hapmap];0.81[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs4707857	0.85[EUR][1000 genomes]
rs62419706	0.80[EUR][1000 genomes]
rs6455380	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6927575	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7760267	0.82[ASW][hapmap];0.81[CEU][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs7771674	0.82[ASW][hapmap];0.81[CEU][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs7775813	0.81[EUR][1000 genomes]
rs781963	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs781966	0.80[EUR][1000 genomes]
rs781969	0.88[ASW][hapmap];0.81[CEU][hapmap];0.85[LWK][hapmap];0.80[TSI][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs781971	0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs781987	0.82[ASW][hapmap];0.81[CEU][hapmap];0.80[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs781989	0.80[EUR][1000 genomes]
rs781990	0.82[ASW][hapmap];0.81[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs781991	0.80[EUR][1000 genomes]
rs781993	0.83[EUR][1000 genomes]
rs782004	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs782005	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs9354939	0.86[GIH][hapmap]
rs9354940	0.85[GIH][hapmap]
rs9364106	0.92[CHD][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs9455215	0.88[ASW][hapmap];0.81[CEU][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9455220	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71418200-71426800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:71418400-71424400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:71419400-71424400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:71420000-71435200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:71420000-71436800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:71421600-71424800	Weak transcription	Aorta	Aorta
7	chr6:71422000-71435200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:71423000-71425400	ZNF genes & repeats	GM12878-XiMat	blood
9	chr6:71423000-71426600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:71423200-71426200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:71423800-71424800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:71424000-71424600	Active TSS	Fetal Heart	heart

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