Variant report

Variant	rs13340636
Chromosome Location	chr8:79410937-79410938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:79410893..79411697-chr8:79419823..79420388,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10091249	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10095086	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10095501	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10099720	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10102189	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10107528	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10216378	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10282748	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11992010	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11993013	0.83[EUR][1000 genomes]
rs11996494	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13438796	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13438972	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28410079	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28550609	0.84[ASN][1000 genomes]
rs28718988	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35487809	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4307332	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4421343	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4498528	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55759929	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57065240	0.95[ASN][1000 genomes]
rs58824115	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59700637	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59894646	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6473105	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72622866	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72622867	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72622868	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72622869	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72622874	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72622880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72622881	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7817739	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7828090	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7833623	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7833709	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9298313	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017218	chr8:79287819-79434844	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539652	chr8:79287819-79434844	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033453	chr8:79320533-79485680	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1029401	chr8:79366260-79427487	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891058	chr8:79408093-79515091	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79410800-79411800	Enhancers	Liver	Liver

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