Variant report

Variant	rs7828090
Chromosome Location	chr8:79408093-79408094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10091249	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10095086	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10095501	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10099720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10102189	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10107528	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10216378	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10282748	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11992010	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11993013	0.83[EUR][1000 genomes]
rs11996494	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13340636	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13438796	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13438972	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28410079	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28550609	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28718988	0.88[EUR][1000 genomes]
rs35487809	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307332	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4421343	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4498528	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55759929	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57065240	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58824115	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59700637	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59894646	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6473105	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72622866	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72622867	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72622868	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72622869	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72622874	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72622880	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72622881	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7817739	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7833623	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7833709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9298313	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017218	chr8:79287819-79434844	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539652	chr8:79287819-79434844	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033453	chr8:79320533-79485680	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1029401	chr8:79366260-79427487	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891058	chr8:79408093-79515091	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79405800-79408200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:79407200-79408200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:79407400-79408200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:79407400-79408200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:79407600-79409000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:79407600-79410200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:79408000-79409200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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