Variant report

Variant	rs13343210
Chromosome Location	chr12:120775876-120775877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120729782..120731453-chr12:120773639..120776177,2	MCF-7	breast:
2	chr12:120724674..120726505-chr12:120774186..120776187,2	MCF-7	breast:
3	chr12:120753311..120755583-chr12:120775360..120777758,2	K562	blood:

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1151840	1.00[AMR][1000 genomes]
rs1151844	1.00[AMR][1000 genomes]
rs1167257	1.00[EUR][1000 genomes]
rs1167357	1.00[AMR][1000 genomes]
rs1179448	1.00[AMR][1000 genomes]
rs1179452	1.00[AMR][1000 genomes]
rs1179453	1.00[AMR][1000 genomes]
rs12301083	1.00[EUR][1000 genomes]
rs16950279	1.00[EUR][1000 genomes]
rs1794737	1.00[AMR][1000 genomes]
rs1794739	1.00[AMR][1000 genomes]
rs1794740	1.00[EUR][1000 genomes]
rs2233672	1.00[EUR][1000 genomes]
rs2522132	1.00[EUR][1000 genomes]
rs2743850	1.00[AMR][1000 genomes]
rs3852590	1.00[EUR][1000 genomes]
rs499344	1.00[AMR][1000 genomes]
rs548087	1.00[AMR][1000 genomes]
rs548201	1.00[AMR][1000 genomes]
rs56792569	1.00[EUR][1000 genomes]
rs57810519	1.00[EUR][1000 genomes]
rs583686	1.00[AMR][1000 genomes]
rs58811988	1.00[EUR][1000 genomes]
rs58820431	1.00[EUR][1000 genomes]
rs59055537	1.00[EUR][1000 genomes]
rs59159546	1.00[EUR][1000 genomes]
rs59211409	1.00[EUR][1000 genomes]
rs59253114	1.00[EUR][1000 genomes]
rs59349654	1.00[EUR][1000 genomes]
rs59986216	1.00[EUR][1000 genomes]
rs61733796	1.00[EUR][1000 genomes]
rs61753910	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
3	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120783800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
3	chr12:120766200-120779200	Weak transcription	Liver	Liver
4	chr12:120769400-120785000	Weak transcription	Gastric	stomach
5	chr12:120773600-120780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:120775800-120776000	ZNF genes & repeats	Fetal Brain Male	brain
7	chr12:120775800-120779400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links