Variant report

Variant	rs59349654
Chromosome Location	chr12:120919415-120919416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120918959..120919675-chr2:184255059..184255939,2	MCF-7	breast:
2	chr12:120916248..120922154-chr12:120930907..120936100,10	MCF-7	breast:
3	chr12:120906066..120907732-chr12:120919315..120921309,2	MCF-7	breast:
4	chr12:120916613..120919534-chr12:120931915..120935906,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111786	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000088986	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10515974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1167257	1.00[EUR][1000 genomes]
rs13343210	1.00[EUR][1000 genomes]
rs16950279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16950282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1794740	1.00[EUR][1000 genomes]
rs2233672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2522132	1.00[EUR][1000 genomes]
rs56821784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57810519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58440772	1.00[AMR][1000 genomes]
rs58811988	1.00[EUR][1000 genomes]
rs58820431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59055537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59211409	1.00[EUR][1000 genomes]
rs59253114	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59986216	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60688174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6490298	1.00[EUR][1000 genomes]
rs7304206	1.00[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120908200-120933200	Weak transcription	Aorta	Aorta
2	chr12:120908400-120919800	Weak transcription	Fetal Intestine Large	intestine
3	chr12:120908400-120925800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:120908400-120926000	Weak transcription	HSMMtube	muscle
5	chr12:120908400-120928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:120908400-120929000	Weak transcription	Psoas Muscle	Psoas
7	chr12:120908400-120932400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:120908400-120932400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:120908600-120925400	Weak transcription	Pancreas	Pancrea
10	chr12:120908600-120927200	Weak transcription	Fetal Brain Female	brain
11	chr12:120908600-120928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:120908600-120928600	Weak transcription	Spleen	Spleen
13	chr12:120908600-120928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:120908600-120932800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr12:120908600-120932800	Weak transcription	Adipose Nuclei	Adipose
16	chr12:120908600-120932800	Weak transcription	Brain Germinal Matrix	brain
17	chr12:120908600-120932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr12:120908600-120933000	Weak transcription	Thymus	Thymus
19	chr12:120908800-120926000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr12:120908800-120928400	Weak transcription	Primary T cells from cord blood	blood
21	chr12:120909200-120919600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:120911000-120932800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:120912000-120928600	Weak transcription	Esophagus	oesophagus
24	chr12:120912600-120929200	Weak transcription	Fetal Thymus	thymus
25	chr12:120912800-120926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:120912800-120928800	Weak transcription	Placenta	Placenta
27	chr12:120912800-120932600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr12:120913000-120927800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:120913000-120928600	Weak transcription	NHDF-Ad	bronchial
30	chr12:120913000-120932600	Weak transcription	NH-A	brain
31	chr12:120913200-120919800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:120913200-120920600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:120913200-120927000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:120913200-120928400	Weak transcription	NHEK	skin
35	chr12:120913200-120932800	Weak transcription	HSMM	muscle
36	chr12:120913600-120926400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:120913600-120926800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr12:120913800-120932400	Weak transcription	HMEC	breast
39	chr12:120914000-120920000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:120914400-120919600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:120914400-120921200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr12:120914400-120932600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr12:120916400-120920800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr12:120916400-120932800	Weak transcription	Liver	Liver
45	chr12:120917400-120919800	Enhancers	K562	blood
46	chr12:120917400-120920000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr12:120917400-120920200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr12:120917600-120919800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr12:120917600-120921400	Strong transcription	Fetal Muscle Leg	muscle
50	chr12:120917800-120919800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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