Variant report

Variant	rs1334489
Chromosome Location	chr6:118639387-118639388
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1006932	0.81[ASN][1000 genomes]
rs11153730	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11758375	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs11968293	0.88[CHB][hapmap];0.89[AMR][1000 genomes]
rs1572226	0.88[CHB][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs2093369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs283040	0.81[CHB][hapmap]
rs6906332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6911035	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6911339	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6927800	0.83[CHB][hapmap]
rs72967533	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs731695	0.82[CHB][hapmap];0.81[YRI][hapmap]
rs7452622	0.81[CHB][hapmap]
rs7749263	0.83[CHB][hapmap]
rs7772845	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs927348	0.83[CHB][hapmap]
rs9489327	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118627800-118641000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:118629000-118640800	Weak transcription	Fetal Brain Female	brain
3	chr6:118629200-118640600	Weak transcription	Ovary	ovary
4	chr6:118629200-118641000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:118629400-118640600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:118630600-118640800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118631400-118640600	Weak transcription	Psoas Muscle	Psoas
8	chr6:118634400-118642600	Enhancers	Colon Smooth Muscle	Colon
9	chr6:118635400-118642000	Weak transcription	Pancreas	Pancrea
10	chr6:118635400-118646400	Weak transcription	Right Ventricle	heart
11	chr6:118636000-118641400	Enhancers	Fetal Heart	heart
12	chr6:118636800-118640600	Enhancers	NHLF	lung
13	chr6:118637000-118639800	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:118637000-118642400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr6:118637200-118639600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:118637400-118640600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:118637400-118646400	Weak transcription	Left Ventricle	heart
18	chr6:118638000-118639400	Enhancers	NHDF-Ad	bronchial
19	chr6:118638200-118639400	Enhancers	Osteobl	bone
20	chr6:118638200-118639600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:118638200-118639800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:118638200-118639800	Enhancers	Liver	Liver
23	chr6:118638200-118639800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:118638200-118643000	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:118638400-118643400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:118638600-118640000	Enhancers	Fetal Stomach	stomach
27	chr6:118638600-118640200	Enhancers	Fetal Lung	lung
28	chr6:118638600-118640400	Enhancers	Adipose Nuclei	Adipose
29	chr6:118638600-118640800	Enhancers	Fetal Kidney	kidney
30	chr6:118638800-118640600	Weak transcription	Aorta	Aorta
31	chr6:118638800-118641000	Weak transcription	Right Atrium	heart
32	chr6:118638800-118642400	Enhancers	Brain Anterior Caudate	brain
33	chr6:118639000-118639400	Weak transcription	Brain Germinal Matrix	brain
34	chr6:118639000-118642600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:118639200-118640000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:118639200-118642400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:118639200-118645400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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