Variant report

Variant	rs7772845
Chromosome Location	chr6:118646016-118646017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118631014..118632814-chr6:118644282..118647263,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11153730	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11758375	0.85[LWK][hapmap];0.84[YRI][hapmap]
rs11968293	0.81[CHB][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs12212582	0.81[MEX][hapmap]
rs1334489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572226	0.83[ASW][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs2093369	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs283042	0.81[MEX][hapmap]
rs283046	0.81[MEX][hapmap]
rs283062	0.86[MEX][hapmap]
rs4307206	0.81[GIH][hapmap];0.84[MEX][hapmap]
rs445566	0.81[MEX][hapmap]
rs6906332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6911035	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6911339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6927800	0.84[YRI][hapmap]
rs72967533	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs731695	0.81[YRI][hapmap]
rs7452622	0.81[CHB][hapmap]
rs7749263	0.84[YRI][hapmap]
rs927348	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7772845	C6orf204	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118635400-118646400	Weak transcription	Right Ventricle	heart
2	chr6:118637400-118646400	Weak transcription	Left Ventricle	heart
3	chr6:118641400-118646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:118641400-118647800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:118641400-118648400	Weak transcription	Psoas Muscle	Psoas
6	chr6:118641800-118646600	Weak transcription	Right Atrium	heart
7	chr6:118642200-118646600	Weak transcription	NHLF	lung
8	chr6:118643200-118646400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:118643400-118646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:118644800-118647200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:118644800-118649000	Enhancers	Aorta	Aorta
12	chr6:118645000-118647200	Enhancers	Fetal Heart	heart
13	chr6:118645400-118648400	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:118645400-118649000	Enhancers	Colon Smooth Muscle	Colon
15	chr6:118645600-118646200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:118645800-118646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:118645800-118646600	Weak transcription	Rectal Smooth Muscle	rectum

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