Variant report

Variant	rs13345784
Chromosome Location	chr19:36748509-36748510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10401909	1.00[AMR][1000 genomes]
rs10404844	1.00[AMR][1000 genomes]
rs10409616	1.00[AMR][1000 genomes]
rs10412442	1.00[AMR][1000 genomes]
rs10414175	1.00[AMR][1000 genomes]
rs10415323	1.00[AMR][1000 genomes]
rs10416695	1.00[AMR][1000 genomes]
rs10417692	1.00[AMR][1000 genomes]
rs10418536	1.00[AMR][1000 genomes]
rs10419429	1.00[AMR][1000 genomes]
rs10419508	1.00[AMR][1000 genomes]
rs10425490	1.00[AMR][1000 genomes]
rs10425511	1.00[AMR][1000 genomes]
rs13346906	1.00[AMR][1000 genomes]
rs28628824	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv961212	chr19:36744378-36801298	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv960831	chr19:36744378-36813769	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36739600-36756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:36745400-36749200	ZNF genes & repeats	Pancreas	Pancrea
3	chr19:36745800-36750600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:36746200-36748800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:36746200-36749400	ZNF genes & repeats	Fetal Stomach	stomach
6	chr19:36746400-36748800	ZNF genes & repeats	Spleen	Spleen
7	chr19:36747000-36750000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:36747600-36749200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:36747600-36749200	Enhancers	Fetal Brain Male	brain
10	chr19:36747600-36749400	ZNF genes & repeats	Lung	lung
11	chr19:36747800-36748600	ZNF genes & repeats	Colonic Mucosa	Colon
12	chr19:36747800-36748800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr19:36747800-36748800	Active TSS	Brain Angular Gyrus	brain
14	chr19:36747800-36749000	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr19:36747800-36749000	Active TSS	Brain Substantia Nigra	brain
16	chr19:36747800-36749200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr19:36747800-36749200	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr19:36747800-36749200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:36747800-36749400	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr19:36747800-36749400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:36747800-36749400	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr19:36747800-36749600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr19:36747800-36749600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:36747800-36749600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr19:36747800-36749800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:36747800-36749800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:36748000-36748600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:36748000-36748600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr19:36748000-36748600	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr19:36748000-36748800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:36748000-36748800	Active TSS	Muscle Satellite Cultured Cells	--
32	chr19:36748000-36748800	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr19:36748000-36748800	Active TSS	Right Ventricle	heart
34	chr19:36748000-36749000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr19:36748000-36749000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr19:36748000-36749000	Active TSS	Brain Anterior Caudate	brain
37	chr19:36748000-36749000	Active TSS	Brain Cingulate Gyrus	brain
38	chr19:36748000-36749000	ZNF genes & repeats	Esophagus	oesophagus
39	chr19:36748000-36749000	Active TSS	Fetal Brain Female	brain
40	chr19:36748000-36749000	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr19:36748000-36749000	Active TSS	Fetal Muscle Leg	muscle
42	chr19:36748000-36749000	Active TSS	Left Ventricle	heart
43	chr19:36748000-36749000	Active TSS	Ovary	ovary
44	chr19:36748000-36749000	Active TSS	Rectal Smooth Muscle	rectum
45	chr19:36748000-36749200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:36748000-36749200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr19:36748000-36749200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr19:36748000-36749200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:36748000-36749200	Active TSS	Brain Hippocampus Middle	brain
50	chr19:36748000-36749200	Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links