Variant report

Variant	rs13347346
Chromosome Location	chr6:88274507-88274508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88268495..88270215-chr6:88273834..88275381,2	MCF-7	breast:
2	chr6:88273263..88275318-chr6:88275795..88277791,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ORC3-2	chr6:88273570-88275290	NONHSAT113910

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2092646	1.00[AMR][1000 genomes]
rs28381462	1.00[AMR][1000 genomes]
rs73752045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv538354	chr6:88273858-88311606	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
2	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
3	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88228600-88285200	Weak transcription	Spleen	Spleen
5	chr6:88229600-88289000	Weak transcription	Lung	lung
6	chr6:88250000-88275200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:88250600-88276800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:88250600-88281600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:88251000-88281800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:88251000-88291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:88251200-88275200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:88251200-88280000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:88251200-88280600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:88251200-88284800	Weak transcription	Stomach Mucosa	stomach
15	chr6:88253600-88274800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:88254200-88283600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:88256000-88284000	Weak transcription	Psoas Muscle	Psoas
18	chr6:88256200-88297600	Weak transcription	Right Ventricle	heart
19	chr6:88256400-88295800	Weak transcription	Gastric	stomach
20	chr6:88257600-88274800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:88259600-88279800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:88260200-88277800	Weak transcription	NHEK	skin
23	chr6:88261000-88274800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:88261000-88276800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr6:88261200-88276800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:88261400-88275600	Strong transcription	Fetal Thymus	thymus
27	chr6:88261400-88276600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:88262000-88275400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:88262400-88279400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:88263200-88282200	Weak transcription	Small Intestine	intestine
31	chr6:88263400-88291400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:88264600-88282800	Weak transcription	Aorta	Aorta
33	chr6:88264600-88291000	Weak transcription	Brain Angular Gyrus	brain
34	chr6:88266800-88276400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:88267400-88276800	Strong transcription	HepG2	liver
36	chr6:88268000-88279200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:88268200-88275600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:88269200-88276400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:88269400-88275400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:88269400-88278400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:88269600-88291400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:88270200-88274600	Strong transcription	Fetal Intestine Large	intestine
43	chr6:88270400-88278600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr6:88271000-88274600	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr6:88271400-88279600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:88271400-88288200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:88271600-88279400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:88271600-88288800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:88271600-88288800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:88272200-88297000	Weak transcription	Brain Germinal Matrix	brain

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