Variant report

Variant	rs2092646
Chromosome Location	chr6:88154680-88154681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13212076	1.00[CHB][hapmap]
rs13347346	1.00[AMR][1000 genomes]
rs28381462	1.00[AMR][1000 genomes]
rs73752045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88153400-88155200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:88154000-88154800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:88154000-88154800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr6:88154000-88154800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:88154000-88154800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:88154000-88154800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:88154000-88154800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:88154000-88154800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:88154000-88154800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:88154000-88154800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:88154000-88154800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:88154000-88155200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:88154000-88155200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:88154400-88154800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:88154400-88154800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:88154400-88155200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:88154600-88154800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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