Variant report

Variant	rs1335293
Chromosome Location	chr13:80301144-80301145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1577404	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2027152	0.83[EUR][1000 genomes]
rs2039552	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2039553	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095470	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2329119	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2329120	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4591027	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7139876	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8001312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915260	0.85[AFR][1000 genomes]
rs9530951	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9545179	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9565521	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9574460	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900589	chr13:80250511-80310295	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80296600-80301400	Enhancers	Fetal Intestine Small	intestine
2	chr13:80296600-80301600	Enhancers	Fetal Intestine Large	intestine
3	chr13:80298200-80302200	Enhancers	HSMMtube	muscle
4	chr13:80299400-80301400	Enhancers	Fetal Muscle Leg	muscle
5	chr13:80299400-80310000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:80300000-80301200	Weak transcription	Fetal Heart	heart
7	chr13:80301000-80301200	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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