Variant report

Variant	rs915260
Chromosome Location	chr13:80298066-80298067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507900	0.86[EUR][1000 genomes]
rs11619959	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12019641	0.82[EUR][1000 genomes]
rs12428029	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12873086	0.83[ASN][1000 genomes]
rs1335293	0.85[AFR][1000 genomes]
rs1414110	0.81[EUR][1000 genomes]
rs2039552	0.84[AFR][1000 genomes]
rs2248409	0.81[EUR][1000 genomes]
rs2248413	0.86[EUR][1000 genomes]
rs2248563	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2262460	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329137	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2329138	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2783085	0.87[EUR][1000 genomes]
rs2802634	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2802638	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2802640	0.87[EUR][1000 genomes]
rs2802641	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35661635	0.87[EUR][1000 genomes]
rs4885658	0.86[EUR][1000 genomes]
rs4885660	0.89[EUR][1000 genomes]
rs7327527	0.85[EUR][1000 genomes]
rs7333106	0.83[ASN][1000 genomes]
rs7338200	0.83[ASN][1000 genomes]
rs7984156	0.82[EUR][1000 genomes]
rs8001312	0.87[AFR][1000 genomes]
rs9530958	0.90[EUR][1000 genomes]
rs9530959	0.88[EUR][1000 genomes]
rs9545179	0.90[AFR][1000 genomes]
rs9545191	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900589	chr13:80250511-80310295	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80296600-80298200	Enhancers	Fetal Muscle Leg	muscle
2	chr13:80296600-80299200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:80296600-80300600	Enhancers	HSMM	muscle
4	chr13:80296600-80301400	Enhancers	Fetal Intestine Small	intestine
5	chr13:80296600-80301600	Enhancers	Fetal Intestine Large	intestine
6	chr13:80296800-80300000	Enhancers	Fetal Heart	heart
7	chr13:80296800-80300400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:80297200-80298200	Enhancers	Small Intestine	intestine
9	chr13:80297200-80299600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:80297200-80300800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:80297400-80298200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:80297400-80298200	Enhancers	Gastric	stomach
13	chr13:80297400-80298200	Enhancers	Pancreas	Pancrea
14	chr13:80297400-80298200	Enhancers	Right Ventricle	heart
15	chr13:80297400-80298800	Enhancers	Adipose Nuclei	Adipose
16	chr13:80297400-80298800	Enhancers	Brain Hippocampus Middle	brain
17	chr13:80297400-80298800	Enhancers	HUVEC	blood vessel
18	chr13:80297400-80299200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:80297400-80299600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:80297400-80299600	Enhancers	Fetal Stomach	stomach
21	chr13:80297400-80300200	Enhancers	Duodenum Mucosa	Duodenum
22	chr13:80297600-80298200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr13:80297600-80298200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:80297600-80298200	Enhancers	Brain Cingulate Gyrus	brain
25	chr13:80297600-80298200	Enhancers	Fetal Brain Female	brain
26	chr13:80297600-80298200	Enhancers	Left Ventricle	heart
27	chr13:80297600-80298200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr13:80297600-80298200	Enhancers	Right Atrium	heart
29	chr13:80297600-80298200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr13:80297600-80298200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr13:80297600-80298200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr13:80297600-80298400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr13:80297600-80299200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:80297600-80299200	Enhancers	NHEK	skin
35	chr13:80297600-80299400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:80297600-80299400	Enhancers	Stomach Mucosa	stomach
37	chr13:80297600-80300400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:80297800-80298200	Enhancers	Colonic Mucosa	Colon
39	chr13:80297800-80298200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr13:80297800-80298200	Flanking Active TSS	Psoas Muscle	Psoas
41	chr13:80297800-80298200	Flanking Active TSS	HSMMtube	muscle
42	chr13:80297800-80298200	Enhancers	NH-A	brain
43	chr13:80297800-80298800	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:80297800-80299400	Enhancers	Fetal Kidney	kidney
45	chr13:80298000-80298200	Enhancers	Brain Substantia Nigra	brain
46	chr13:80298000-80298200	Enhancers	Fetal Muscle Trunk	muscle
47	chr13:80298000-80298400	Enhancers	Fetal Brain Male	brain
48	chr13:80298000-80298400	Enhancers	HepG2	liver
49	chr13:80298000-80298600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr13:80298000-80298600	Enhancers	Brain Angular Gyrus	brain

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