Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10052015	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10052314	0.87[ASN][1000 genomes]
rs10053303	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10060641	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10078496	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10079044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10474336	1.00[JPT][hapmap]
rs10514340	1.00[JPT][hapmap]
rs10942620	0.90[ASN][1000 genomes]
rs11740777	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12054681	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12520956	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12522395	1.00[JPT][hapmap]
rs16869247	0.87[ASN][1000 genomes]
rs2366935	0.83[CHB][hapmap]
rs4916698	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs6878896	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6882955	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73771151	0.89[ASN][1000 genomes]
rs7724016	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv462247	chr5:90249900-90298632	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv598928	chr5:90249900-90298632	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv598929	chr5:90258584-90302117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv598930	chr5:90258584-90303764	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv598931	chr5:90258584-90307152	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90262800-90267400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr5:90265800-90286200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:90266000-90267600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:90266000-90281200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:90266200-90272000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:90266200-90285600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:90266600-90281000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:90266600-90290600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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