Variant report

Variant	rs10052314
Chromosome Location	chr5:90248747-90248748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90242754..90246158-chr5:90247864..90250143,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035662	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10052015	0.80[ASN][1000 genomes]
rs10053303	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10060641	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10078496	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10079044	0.88[ASN][1000 genomes]
rs10514340	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10942620	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11740777	0.82[ASN][1000 genomes]
rs12054681	0.83[ASN][1000 genomes]
rs12055217	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12515481	0.80[ASN][1000 genomes]
rs12520956	0.80[ASN][1000 genomes]
rs12522395	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13353995	0.87[ASN][1000 genomes]
rs16869247	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556421	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28597697	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4916698	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916832	0.80[EUR][1000 genomes]
rs56908576	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs57954532	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58201771	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6882955	0.82[ASN][1000 genomes]
rs73185149	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73185150	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73771151	0.85[ASN][1000 genomes]
rs7708774	0.85[EUR][1000 genomes]
rs7724016	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90230400-90265200	Weak transcription	K562	blood
2	chr5:90231600-90250800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:90236800-90263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:90242600-90261000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:90247000-90250600	Weak transcription	HepG2	liver

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