Variant report

Variant	rs73185150
Chromosome Location	chr5:90238083-90238084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90226670..90228954-chr5:90237004..90239086,2	K562	blood:
2	chr5:90236183..90238569-chr5:90244503..90246881,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035662	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10052015	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10052314	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10053303	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060641	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10061193	0.83[EUR][1000 genomes]
rs10078496	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10474336	0.87[ASN][1000 genomes]
rs10514340	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10942620	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12054681	0.94[ASN][1000 genomes]
rs12055217	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513628	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12515473	0.83[ASN][1000 genomes]
rs12515481	0.91[ASN][1000 genomes]
rs12520956	0.91[ASN][1000 genomes]
rs12522395	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13355731	0.82[ASN][1000 genomes]
rs16869247	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17556421	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28597697	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916698	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55977992	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56908576	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57954532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58201771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878896	0.90[ASN][1000 genomes]
rs73185149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7724016	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90225800-90244000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:90228400-90239200	Weak transcription	Aorta	Aorta
3	chr5:90230400-90265200	Weak transcription	K562	blood
4	chr5:90231600-90250800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:90235000-90238400	Enhancers	Fetal Kidney	kidney
6	chr5:90236600-90243400	Weak transcription	HepG2	liver
7	chr5:90236800-90239400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:90236800-90239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:90236800-90239400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:90236800-90239400	Weak transcription	HMEC	breast
11	chr5:90236800-90240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:90236800-90263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:90237000-90239200	Weak transcription	NHEK	skin
14	chr5:90237400-90241000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:90237400-90246400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:90237600-90239200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:90237600-90239400	Weak transcription	A549	lung
18	chr5:90237600-90241600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:90237600-90241800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:90237600-90242200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:90237600-90245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:90237800-90241600	Weak transcription	Brain Germinal Matrix	brain

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