Variant report

Variant	rs13356561
Chromosome Location	chr5:106486984-106486985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10055139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061217	1.00[AMR][1000 genomes]
rs10065551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067562	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332507	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13360429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28463192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28522914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711024	1.00[AMR][1000 genomes]
rs56120929	0.81[AFR][1000 genomes]
rs9327989	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106484000-106489200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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