Variant report

Variant	rs56120929
Chromosome Location	chr5:106565951-106565952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106564448..106567221-chr5:106567347..106569105,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10055139	0.81[AFR][1000 genomes]
rs10067562	1.00[AFR][1000 genomes]
rs10071074	0.81[AFR][1000 genomes]
rs11950186	0.81[EUR][1000 genomes]
rs11950865	0.81[EUR][1000 genomes]
rs12110001	0.95[EUR][1000 genomes]
rs12332507	1.00[AFR][1000 genomes]
rs13355116	0.81[AFR][1000 genomes]
rs13356561	0.81[AFR][1000 genomes]
rs13357132	0.81[AFR][1000 genomes]
rs13358415	0.81[AFR][1000 genomes]
rs13360429	0.81[AFR][1000 genomes]
rs28463192	0.81[AFR][1000 genomes]
rs28572078	0.81[AFR][1000 genomes]
rs28647772	0.81[AFR][1000 genomes]
rs55684782	0.95[EUR][1000 genomes]
rs55828989	0.95[EUR][1000 genomes]
rs55977696	0.95[EUR][1000 genomes]
rs55988283	0.95[EUR][1000 genomes]
rs56002931	0.95[EUR][1000 genomes]
rs56348523	1.00[AMR][1000 genomes]
rs57983741	0.95[EUR][1000 genomes]
rs59076946	0.86[EUR][1000 genomes]
rs59167461	0.95[EUR][1000 genomes]
rs73780166	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv882680	chr5:106493350-106573961	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882681	chr5:106508913-106573961	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106564800-106566200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr5:106565800-106566400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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