Variant report

Variant	rs55828989
Chromosome Location	chr5:106435966-106435967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12110001	1.00[EUR][1000 genomes]
rs55684782	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55845712	1.00[AMR][1000 genomes]
rs55977696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55988283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56002931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56120929	0.95[EUR][1000 genomes]
rs57983741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59076946	0.90[EUR][1000 genomes]
rs59167461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106430600-106438800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:106430600-106438800	Weak transcription	Aorta	Aorta
3	chr5:106435000-106440200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:106435000-106440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:106435000-106440200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:106435000-106440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:106435400-106440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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