Variant report

Variant	rs13356838
Chromosome Location	chr5:151867767-151867768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10064775	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064906	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073119	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213725	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357376	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392934	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544023	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549908	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28666494	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28722636	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579942	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864262	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864734	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356589	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356630	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151866200-151867800	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:151867000-151868600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:151867600-151868200	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links