Variant report

Variant	rs6579942
Chromosome Location	chr5:151849961-151849962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10064775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13356838	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359448	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1422342	0.83[AFR][1000 genomes]
rs28392934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28666494	1.00[AMR][1000 genomes]
rs28722636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55696776	0.83[AFR][1000 genomes]
rs6579941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151846000-151851600	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:151846400-151850000	Weak transcription	Right Atrium	heart
3	chr5:151846400-151851200	Weak transcription	Left Ventricle	heart
4	chr5:151848800-151850000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:151849400-151851200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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