Variant report

Variant	rs13357188
Chromosome Location	chr5:112659796-112659797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037836	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042401	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10056104	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477489	1.00[AMR][1000 genomes]
rs10478116	1.00[AMR][1000 genomes]
rs11958613	1.00[AMR][1000 genomes]
rs12110055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135568	0.89[AMR][1000 genomes]
rs17135570	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28439752	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28462299	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2860051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711712	1.00[AMR][1000 genomes]
rs55889115	1.00[AMR][1000 genomes]
rs57727389	0.89[AMR][1000 genomes]
rs59032550	1.00[AMR][1000 genomes]
rs61560548	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781510	1.00[AMR][1000 genomes]
rs73781511	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781512	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7718459	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7736171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112648800-112666600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:112653000-112673600	Weak transcription	Fetal Kidney	kidney
3	chr5:112656000-112666200	Weak transcription	HMEC	breast
4	chr5:112656200-112661200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:112656600-112666600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:112657400-112669200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:112657600-112660600	Weak transcription	Liver	Liver
8	chr5:112658000-112666600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links