Variant report

Variant	rs59032550
Chromosome Location	chr5:112632017-112632018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037836	1.00[AMR][1000 genomes]
rs10037845	1.00[AMR][1000 genomes]
rs10042401	0.89[AMR][1000 genomes]
rs10056104	1.00[AMR][1000 genomes]
rs10477489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958613	1.00[AMR][1000 genomes]
rs12110055	1.00[AMR][1000 genomes]
rs13357188	1.00[AMR][1000 genomes]
rs13358281	1.00[AMR][1000 genomes]
rs17135568	0.89[AMR][1000 genomes]
rs17135570	0.89[AMR][1000 genomes]
rs28439752	1.00[AMR][1000 genomes]
rs28462299	1.00[AMR][1000 genomes]
rs28497391	1.00[AMR][1000 genomes]
rs2860051	1.00[AMR][1000 genomes]
rs28711712	1.00[AMR][1000 genomes]
rs55889115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57727389	0.89[AMR][1000 genomes]
rs61560548	1.00[AMR][1000 genomes]
rs73781507	1.00[AMR][1000 genomes]
rs73781509	1.00[AMR][1000 genomes]
rs73781510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781511	1.00[AMR][1000 genomes]
rs73781512	1.00[AMR][1000 genomes]
rs7718459	1.00[AMR][1000 genomes]
rs7720189	1.00[AMR][1000 genomes]
rs7736171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018078	chr5:112615220-112657404	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112630800-112632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112631000-112632200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:112631200-112632200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:112631200-112632200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:112631200-112632200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr5:112631200-112632200	Enhancers	Fetal Lung	lung
7	chr5:112631200-112632400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:112631200-112632400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:112631200-112632600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:112631200-112633000	Enhancers	HMEC	breast
11	chr5:112631200-112633000	Enhancers	NHEK	skin
12	chr5:112631200-112633200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:112631400-112632200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:112631400-112632200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr5:112631400-112632200	Enhancers	Ovary	ovary
16	chr5:112631400-112632200	Weak transcription	Right Ventricle	heart
17	chr5:112631400-112632400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:112631400-112632400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
19	chr5:112631400-112632400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:112631400-112632400	Enhancers	Stomach Smooth Muscle	stomach
21	chr5:112631400-112632600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:112631400-112632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:112631400-112632800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:112631400-112632800	Enhancers	Fetal Heart	heart
25	chr5:112631600-112632200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:112631600-112632600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:112631800-112632400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr5:112631800-112632400	Enhancers	Left Ventricle	heart
29	chr5:112631800-112632600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:112631800-112632800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:112632000-112632200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr5:112632000-112632200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr5:112632000-112632200	Enhancers	Right Atrium	heart
34	chr5:112632000-112632400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:112632000-112633000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:112632000-112635600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links