Variant report

Variant	rs13358236
Chromosome Location	chr5:16970773-16970774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10035796	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10037148	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10045328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059183	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10060802	1.00[ASN][1000 genomes]
rs10076121	1.00[ASN][1000 genomes]
rs13361318	1.00[ASN][1000 genomes]
rs16869292	1.00[ASN][1000 genomes]
rs57715448	1.00[EUR][1000 genomes]
rs57947539	0.81[AFR][1000 genomes]
rs60550726	0.88[ASN][1000 genomes]
rs60772415	1.00[ASN][1000 genomes]
rs6554952	1.00[EUR][1000 genomes]
rs73066842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73066857	0.92[ASN][1000 genomes]
rs7734131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015247	chr5:16748966-17133274	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv3418808	chr5:16940001-16973969	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3510797	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3510798	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16965400-16970800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:16966000-16973000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:16970200-16971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:16970200-16971200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:16970200-16972400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:16970200-16973800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:16970400-16970800	Enhancers	NHEK	skin
8	chr5:16970400-16971000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:16970600-16971200	Enhancers	HMEC	breast
10	chr5:16970600-16972000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:16970600-16975000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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