Variant report

Variant	rs13358649
Chromosome Location	chr5:167220847-167220848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10060956	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656874	0.82[ASN][1000 genomes]
rs12657312	0.82[ASN][1000 genomes]
rs12657597	0.80[ASN][1000 genomes]
rs1549309	0.91[ASN][1000 genomes]
rs55855842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61690402	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66525444	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167217600-167221200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:167218000-167229600	Weak transcription	HSMM	muscle
4	chr5:167218200-167221400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167218200-167225000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:167218800-167221800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:167219000-167223200	Weak transcription	Osteobl	bone
8	chr5:167219600-167225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:167219600-167225400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:167219800-167221200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:167219800-167221800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:167219800-167229600	Weak transcription	NH-A	brain
13	chr5:167220000-167222600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:167220200-167221200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:167220200-167221600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:167220200-167224000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167220200-167225200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:167220200-167229600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:167220400-167221400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:167220400-167221600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:167220400-167221800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr5:167220400-167229600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:167220600-167221000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:167220600-167221000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:167220600-167222000	Enhancers	Liver	Liver
26	chr5:167220800-167224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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