Variant report

Variant	rs10060956
Chromosome Location	chr5:167250036-167250037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10064701	0.85[CEU][hapmap]
rs10072896	0.86[CEU][hapmap]
rs10516040	0.82[CHB][hapmap]
rs11948139	0.85[CEU][hapmap]
rs12656874	0.90[ASN][1000 genomes]
rs12657312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12657597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13357813	0.85[CEU][hapmap]
rs13358649	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13436693	0.86[CEU][hapmap]
rs1549309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1549310	1.00[CEU][hapmap]
rs17069188	0.85[CEU][hapmap]
rs2287764	0.86[CHB][hapmap]
rs2337001	0.85[CEU][hapmap]
rs41416744	1.00[CHB][hapmap]
rs55855842	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61690402	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7701095	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167240000-167250600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167246800-167250200	Enhancers	Fetal Lung	lung
3	chr5:167246800-167250800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167247000-167250200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167247000-167250400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
7	chr5:167248200-167250200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167248400-167251400	Enhancers	Brain Germinal Matrix	brain
9	chr5:167248400-167255200	Weak transcription	Esophagus	oesophagus
10	chr5:167248600-167250200	Active TSS	HMEC	breast
11	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:167249400-167250200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:167249600-167250200	Weak transcription	Fetal Brain Male	brain
14	chr5:167249600-167250600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr5:167250000-167250200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:167250000-167250200	Flanking Active TSS	NHEK	skin
17	chr5:167250000-167253400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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