Variant report

Variant	rs7701095
Chromosome Location	chr5:167157035-167157036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10060956	0.82[CHB][hapmap]
rs10223130	0.83[GIH][hapmap]
rs10516040	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12653276	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12656874	1.00[CEU][hapmap]
rs12657312	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap]
rs12657597	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12658335	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1549309	0.82[CHB][hapmap]
rs17069029	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2287764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2337016	1.00[CEU][hapmap]
rs279412	1.00[CEU][hapmap]
rs41416744	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167152600-167170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167153000-167165800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167155600-167158000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:167155800-167158000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:167155800-167158400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:167156000-167157400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:167156000-167158000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:167156000-167158000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167156000-167158000	Enhancers	NH-A	brain
10	chr5:167156000-167158000	Enhancers	NHDF-Ad	bronchial
11	chr5:167156000-167158400	Enhancers	HMEC	breast
12	chr5:167156000-167158400	Enhancers	HSMM	muscle
13	chr5:167156000-167158400	Enhancers	NHEK	skin
14	chr5:167156000-167160400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167156200-167157800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:167156200-167158000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:167156200-167158000	Enhancers	Osteobl	bone
18	chr5:167156400-167157400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:167156400-167158200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:167156600-167157400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:167156600-167157800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:167156600-167158000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:167156800-167157200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:167156800-167157400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr5:167156800-167157800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:167156800-167158000	Enhancers	A549	lung
27	chr5:167156800-167158000	Enhancers	HSMMtube	muscle
28	chr5:167156800-167158400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:167156800-167158400	Enhancers	Hela-S3	cervix
30	chr5:167156800-167158600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:167157000-167157200	Enhancers	Adipose Nuclei	Adipose
32	chr5:167157000-167157400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr5:167157000-167157800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:167157000-167157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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