Variant report
| Variant | rs1335943 |
|---|---|
| Chromosome Location | chr1:166775438-166775439 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143157 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10157620 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs10800263 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12758334 | 0.83[CHB][hapmap] |
| rs2064067 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2205648 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2205649 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2312232 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2312233 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2312237 | 0.84[CEU][hapmap] |
| rs4657603 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs513502 | 0.83[CHB][hapmap] |
| rs6427036 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6427037 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6664012 | 1.00[ASN][1000 genomes] |
| rs6667673 | 0.84[CEU][hapmap] |
| rs6688498 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6695378 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6699360 | 0.88[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6699588 | 0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7538895 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7544852 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs858795 | 0.83[CHB][hapmap] |
| rs858816 | 0.97[ASN][1000 genomes] |
| rs858817 | 0.97[ASN][1000 genomes] |
| rs972521 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs972522 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs972523 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:166774600-166777600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
