Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166774337..166777368-chr1:166807200..166809077,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143157	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10157620	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10753743	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10800263	0.81[ASN][1000 genomes]
rs10800265	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1335943	0.84[CEU][hapmap]
rs2064067	0.84[ASN][1000 genomes]
rs2205647	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2205648	0.84[ASN][1000 genomes]
rs2205649	0.84[ASN][1000 genomes]
rs2312232	0.84[ASN][1000 genomes]
rs2312233	0.84[ASN][1000 genomes]
rs2312237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4657603	0.92[ASN][1000 genomes]
rs6427036	0.84[ASN][1000 genomes]
rs6427037	0.84[ASN][1000 genomes]
rs6664012	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6670494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6683488	0.81[EUR][1000 genomes]
rs6695378	0.97[ASN][1000 genomes]
rs6699360	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6699588	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7544852	0.93[ASN][1000 genomes]
rs7544940	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs972521	0.84[ASN][1000 genomes]
rs972522	0.84[ASN][1000 genomes]
rs972523	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166774600-166777600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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