Variant report

Variant	rs13360640
Chromosome Location	chr5:112300336-112300337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112293295..112296045-chr5:112298149..112301329,3	MCF-7	breast:
2	chr5:112298220..112301576-chr5:112303525..112306248,4	K562	blood:
3	chr5:112299891..112302551-chr5:112304057..112307148,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10058561	1.00[EUR][1000 genomes]
rs10519333	1.00[EUR][1000 genomes]
rs11555908	1.00[EUR][1000 genomes]
rs17135066	1.00[EUR][1000 genomes]
rs17135070	1.00[EUR][1000 genomes]
rs17135100	1.00[EUR][1000 genomes]
rs17135108	1.00[EUR][1000 genomes]
rs17135117	1.00[EUR][1000 genomes]
rs17135149	1.00[EUR][1000 genomes]
rs17135155	1.00[EUR][1000 genomes]
rs3733963	1.00[EUR][1000 genomes]
rs3822652	1.00[EUR][1000 genomes]
rs3822654	1.00[EUR][1000 genomes]
rs3892986	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57726881	1.00[EUR][1000 genomes]
rs57749964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58865195	1.00[EUR][1000 genomes]
rs59349522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594652	1.00[EUR][1000 genomes]
rs6864403	1.00[EUR][1000 genomes]
rs728344	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73227382	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73227383	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7728109	1.00[EUR][1000 genomes]
rs7728481	1.00[EUR][1000 genomes]
rs7730241	1.00[EUR][1000 genomes]
rs7735121	1.00[EUR][1000 genomes]
rs9687790	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019756	chr5:112242315-112325943	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112294000-112311800	Weak transcription	Right Atrium	heart
2	chr5:112294800-112304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:112295200-112304400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:112297000-112304400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:112298200-112311800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:112298800-112300400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:112298800-112300400	Enhancers	K562	blood
8	chr5:112299000-112300400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:112299000-112300400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:112299000-112300400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:112299000-112300400	Enhancers	Placenta	Placenta
12	chr5:112299600-112300400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:112299800-112300400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:112300000-112300400	Enhancers	GM12878-XiMat	blood
15	chr5:112300000-112301600	Weak transcription	HepG2	liver
16	chr5:112300000-112305200	Weak transcription	NH-A	brain
17	chr5:112300000-112305600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:112300000-112307000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:112300200-112303200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:112300200-112303800	Weak transcription	A549	lung
21	chr5:112300200-112305000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr5:112300200-112305000	Weak transcription	Hela-S3	cervix
23	chr5:112300200-112305000	Weak transcription	HUVEC	blood vessel
24	chr5:112300200-112305000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:112300200-112311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links