Variant report

Variant	rs57749964
Chromosome Location	chr5:112279500-112279501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10058561	1.00[EUR][1000 genomes]
rs10064080	0.90[ASN][1000 genomes]
rs10519333	1.00[EUR][1000 genomes]
rs11555908	1.00[EUR][1000 genomes]
rs13354064	0.88[ASN][1000 genomes]
rs13360640	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13360667	0.86[ASN][1000 genomes]
rs17135066	1.00[EUR][1000 genomes]
rs17135070	1.00[EUR][1000 genomes]
rs17135100	1.00[EUR][1000 genomes]
rs17135108	1.00[EUR][1000 genomes]
rs17135117	1.00[EUR][1000 genomes]
rs17135149	1.00[EUR][1000 genomes]
rs17135155	1.00[EUR][1000 genomes]
rs17135193	0.94[ASN][1000 genomes]
rs1833560	0.89[ASN][1000 genomes]
rs28635838	0.84[ASN][1000 genomes]
rs28789211	0.90[ASN][1000 genomes]
rs3733963	1.00[EUR][1000 genomes]
rs3822652	1.00[EUR][1000 genomes]
rs3822654	1.00[EUR][1000 genomes]
rs3892986	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3962814	0.83[ASN][1000 genomes]
rs57726881	1.00[EUR][1000 genomes]
rs58775131	0.98[ASN][1000 genomes]
rs58865195	1.00[EUR][1000 genomes]
rs59349522	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6594652	1.00[EUR][1000 genomes]
rs6864403	1.00[EUR][1000 genomes]
rs6864647	0.93[ASN][1000 genomes]
rs728344	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs728347	0.87[ASN][1000 genomes]
rs73227370	0.86[ASN][1000 genomes]
rs73227382	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73227383	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7728109	1.00[EUR][1000 genomes]
rs7728481	1.00[EUR][1000 genomes]
rs7730241	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7730441	0.88[ASN][1000 genomes]
rs7735121	1.00[EUR][1000 genomes]
rs9687790	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019756	chr5:112242315-112325943	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2763866	chr5:112254282-112284223	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112258400-112287400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links