Variant report

Variant	rs1336184
Chromosome Location	chr1:61737134-61737135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61737048..61738584-chr1:61739343..61741335,2	K562	blood:
2	chr1:61728304..61732793-chr1:61733623..61738337,5	K562	blood:
3	chr1:61731996..61734733-chr1:61736791..61738514,3	MCF-7	breast:
4	chr1:61724468..61727373-chr1:61734110..61737676,4	K562	blood:
5	chr1:61698276..61700833-chr1:61735388..61737265,2	K562	blood:
6	chr1:61736316..61738888-chr1:61747987..61750096,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11806791	1.00[ASN][1000 genomes]
rs17121833	1.00[ASN][1000 genomes]
rs17121835	1.00[ASN][1000 genomes]
rs17121841	1.00[ASN][1000 genomes]
rs17265357	0.90[AMR][1000 genomes]
rs17265364	0.90[AMR][1000 genomes]
rs17265370	0.90[AMR][1000 genomes]
rs17311684	1.00[ASN][1000 genomes]
rs17311775	0.90[AMR][1000 genomes]
rs17377267	1.00[ASN][1000 genomes]
rs17377274	1.00[ASN][1000 genomes]
rs17377281	1.00[ASN][1000 genomes]
rs61593957	1.00[ASN][1000 genomes]
rs72911905	1.00[ASN][1000 genomes]
rs72929847	1.00[ASN][1000 genomes]
rs74086705	1.00[ASN][1000 genomes]
rs74090327	1.00[ASN][1000 genomes]
rs74090339	1.00[ASN][1000 genomes]
rs74090351	1.00[ASN][1000 genomes]
rs7515011	1.00[ASN][1000 genomes]
rs9970140	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1001052	chr1:61702011-62090670	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv817402	chr1:61703965-62119762	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1010797	chr1:61703966-62125970	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv530494	chr1:61723918-62084045	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61719400-61737200	Weak transcription	Esophagus	oesophagus
2	chr1:61720800-61755800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:61721000-61754400	Weak transcription	Pancreas	Pancrea
4	chr1:61722800-61740600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:61725800-61750400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:61726000-61742800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:61726000-61743200	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:61727200-61737400	Enhancers	HepG2	liver
9	chr1:61728000-61740600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:61729200-61742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:61729600-61754400	Weak transcription	Lung	lung
12	chr1:61732600-61737600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:61732600-61742800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:61732800-61750000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:61733200-61737400	Enhancers	Brain Cingulate Gyrus	brain
16	chr1:61733200-61737800	Enhancers	Brain Hippocampus Middle	brain
17	chr1:61733400-61739200	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:61733600-61737200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:61733800-61737400	Enhancers	A549	lung
20	chr1:61734000-61737400	Enhancers	Fetal Brain Male	brain
21	chr1:61734000-61739200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:61734200-61737600	Enhancers	Brain Angular Gyrus	brain
23	chr1:61734600-61737200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:61734800-61737200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:61734800-61737400	Enhancers	Fetal Brain Female	brain
26	chr1:61734800-61737600	Enhancers	Brain Germinal Matrix	brain
27	chr1:61734800-61738600	Weak transcription	Right Atrium	heart
28	chr1:61734800-61738800	Weak transcription	Left Ventricle	heart
29	chr1:61734800-61739000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:61735400-61738000	Enhancers	Brain Substantia Nigra	brain
31	chr1:61735400-61739000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:61735400-61739000	Weak transcription	Psoas Muscle	Psoas
33	chr1:61735600-61738200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:61735600-61738800	Weak transcription	Adipose Nuclei	Adipose
35	chr1:61735600-61738800	Weak transcription	Fetal Lung	lung
36	chr1:61735600-61740600	Weak transcription	Liver	Liver
37	chr1:61735600-61742000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:61735600-61743200	Weak transcription	Fetal Stomach	stomach
39	chr1:61735800-61742000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:61735800-61742000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:61736000-61737600	Enhancers	NHEK	skin
42	chr1:61736200-61737200	Enhancers	Hela-S3	cervix
43	chr1:61736200-61738000	Enhancers	HUVEC	blood vessel
44	chr1:61736200-61738200	Weak transcription	Brain Anterior Caudate	brain
45	chr1:61736400-61737400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:61736400-61737400	Enhancers	Osteobl	bone
47	chr1:61736800-61737200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:61736800-61737200	Enhancers	Fetal Heart	heart
49	chr1:61736800-61737400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:61736800-61737400	Enhancers	Small Intestine	intestine

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