Variant report

Variant	rs13362387
Chromosome Location	chr5:178363254-178363255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178361102..178363466-chr5:178379891..178382466,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10434800	0.88[ASN][1000 genomes]
rs10516151	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs11745403	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1496949	0.90[JPT][hapmap]
rs1995079	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2004503	0.86[CHD][hapmap];0.91[JPT][hapmap]
rs4700927	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6600993	0.95[JPT][hapmap]
rs6600994	0.90[JPT][hapmap]
rs7701607	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7702879	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs7718717	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13362387	ZFP2	cis	cerebellum	SCAN
rs13362387	OR2V2	cis	cerebellum	SCAN
rs13362387	ZNF454	cis	parietal	SCAN
rs13362387	N4BP3	cis	parietal	SCAN
rs13362387	HNRNPAB	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
7	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
8	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
12	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
13	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
16	chr5:178360600-178366600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr5:178360800-178365600	ZNF genes & repeats	Aorta	Aorta
18	chr5:178360800-178365800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr5:178361600-178365800	ZNF genes & repeats	Left Ventricle	heart
20	chr5:178361800-178364400	ZNF genes & repeats	Right Ventricle	heart
21	chr5:178362800-178365000	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr5:178362800-178369000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr5:178363200-178369000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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