Variant report

Variant	rs11745403
Chromosome Location	chr5:178345670-178345671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035887	0.92[ASN][1000 genomes]
rs10043579	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10044051	0.90[ASN][1000 genomes]
rs10055777	0.90[ASN][1000 genomes]
rs10055826	0.91[ASN][1000 genomes]
rs10071186	0.88[ASN][1000 genomes]
rs10434800	0.89[ASN][1000 genomes]
rs10516151	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs11249601	0.91[ASN][1000 genomes]
rs11249603	0.94[ASN][1000 genomes]
rs11746382	0.94[ASN][1000 genomes]
rs12653764	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13154558	0.94[ASN][1000 genomes]
rs13362387	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1496949	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1496950	0.93[ASN][1000 genomes]
rs1995079	0.83[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2004503	0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4444956	0.83[EUR][1000 genomes]
rs4700927	0.82[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6600993	0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6600994	0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6866021	0.91[ASN][1000 genomes]
rs6872605	0.94[ASN][1000 genomes]
rs6872794	0.94[ASN][1000 genomes]
rs6873993	0.94[ASN][1000 genomes]
rs6880072	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6897783	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6898923	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899251	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701607	0.82[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7702879	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7718717	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs953740	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv600464	chr5:178344648-178350709	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600465	chr5:178344648-178352002	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv600466	chr5:178344648-178352245	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv600467	chr5:178344648-178352820	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv600468	chr5:178344648-178353156	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178341600-178345800	ZNF genes & repeats	Fetal Lung	lung
4	chr5:178341600-178345800	ZNF genes & repeats	Ovary	ovary
5	chr5:178341600-178347000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178341600-178347200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
7	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
8	chr5:178342000-178348200	Weak transcription	Right Ventricle	heart
9	chr5:178342800-178346000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:178343000-178346000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr5:178343800-178348000	Weak transcription	Brain Angular Gyrus	brain
13	chr5:178344800-178345800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr5:178344800-178346000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
15	chr5:178344800-178346400	Strong transcription	Brain Substantia Nigra	brain
16	chr5:178345000-178346600	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:178345400-178346000	ZNF genes & repeats	Left Ventricle	heart
18	chr5:178345400-178346200	ZNF genes & repeats	Brain Germinal Matrix	brain
19	chr5:178345400-178347200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:178345600-178346600	Weak transcription	Aorta	Aorta
21	chr5:178345600-178347600	Weak transcription	Fetal Kidney	kidney
22	chr5:178345600-178347800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:178345600-178348000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:178345600-178349400	Weak transcription	Primary T cells from cord blood	blood

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