Variant report

Variant	rs12653764
Chromosome Location	chr5:178333588-178333589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10035887	0.88[ASN][1000 genomes]
rs10043579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10044051	0.87[ASN][1000 genomes]
rs10055777	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10055826	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10071186	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10516151	0.85[ASN][1000 genomes]
rs11249601	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11249603	0.85[ASN][1000 genomes]
rs11745403	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11746382	0.85[ASN][1000 genomes]
rs13154558	0.86[ASN][1000 genomes]
rs1496949	0.85[ASN][1000 genomes]
rs1496950	0.87[ASN][1000 genomes]
rs1995079	0.85[ASN][1000 genomes]
rs2004503	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4444956	0.88[EUR][1000 genomes]
rs4700927	0.85[ASN][1000 genomes]
rs6600993	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6600994	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6866021	0.89[ASN][1000 genomes]
rs6872605	0.86[ASN][1000 genomes]
rs6872794	0.86[ASN][1000 genomes]
rs6873993	0.86[ASN][1000 genomes]
rs6880072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6897783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6898923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6899251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7701607	0.85[ASN][1000 genomes]
rs7702879	0.85[ASN][1000 genomes]
rs953740	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
4	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:178328000-178334400	Weak transcription	Psoas Muscle	Psoas
6	chr5:178332400-178334600	ZNF genes & repeats	Liver	Liver
7	chr5:178332800-178334200	ZNF genes & repeats	Fetal Stomach	stomach
8	chr5:178332800-178334200	ZNF genes & repeats	Ovary	ovary
9	chr5:178332800-178334400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr5:178333000-178333600	ZNF genes & repeats	Dnd41	blood
11	chr5:178333000-178334200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:178333000-178334200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:178333200-178333800	Weak transcription	Colonic Mucosa	Colon
15	chr5:178333400-178335600	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:178333400-178335600	Weak transcription	Brain Substantia Nigra	brain
17	chr5:178333400-178335600	Weak transcription	Left Ventricle	heart
18	chr5:178333400-178335800	Weak transcription	Gastric	stomach
19	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
20	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum

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