Variant report

Variant	rs6866021
Chromosome Location	chr5:178334467-178334468
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10035887	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10040956	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10043579	0.99[ASN][1000 genomes]
rs10044051	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10055777	0.98[ASN][1000 genomes]
rs10055826	0.99[ASN][1000 genomes]
rs10067521	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10071186	0.95[ASN][1000 genomes]
rs10434800	0.85[ASN][1000 genomes]
rs1046726	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs10479515	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10479516	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10516151	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249601	0.99[ASN][1000 genomes]
rs11249603	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11743869	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs11745403	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11746382	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11955586	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11960446	0.88[EUR][1000 genomes]
rs12653764	0.89[ASN][1000 genomes]
rs13154558	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13362387	0.90[JPT][hapmap]
rs1496949	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1496950	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995079	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2004503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4130052	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs4700927	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62393052	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6600990	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6600993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6600994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6870709	0.86[EUR][1000 genomes]
rs6872605	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6872794	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873993	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6880072	1.00[ASN][1000 genomes]
rs6885597	0.86[EUR][1000 genomes]
rs6897783	0.99[ASN][1000 genomes]
rs6898923	0.99[ASN][1000 genomes]
rs6899251	0.99[ASN][1000 genomes]
rs7701607	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7702579	0.86[EUR][1000 genomes]
rs7702879	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7718717	0.85[ASN][1000 genomes]
rs9329059	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs953740	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3470830	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3470831	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
3	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:178332400-178334600	ZNF genes & repeats	Liver	Liver
5	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:178333400-178335600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:178333400-178335600	Weak transcription	Brain Substantia Nigra	brain
8	chr5:178333400-178335600	Weak transcription	Left Ventricle	heart
9	chr5:178333400-178335800	Weak transcription	Gastric	stomach
10	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
11	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:178334200-178334800	Strong transcription	Ovary	ovary

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