Variant report

Variant	rs953740
Chromosome Location	chr5:178329728-178329729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035887	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10043579	0.99[ASN][1000 genomes]
rs10044051	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10055777	0.99[ASN][1000 genomes]
rs10055826	1.00[ASN][1000 genomes]
rs10071186	0.97[ASN][1000 genomes]
rs10434800	0.85[ASN][1000 genomes]
rs10516151	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11249601	1.00[ASN][1000 genomes]
rs11249603	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11745403	0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11746382	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12653764	0.87[ASN][1000 genomes]
rs13154558	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13362387	0.81[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs1496949	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1496950	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1995079	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2004503	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4700927	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6600993	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6600994	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6866021	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6872605	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6872794	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6873993	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6880072	0.99[ASN][1000 genomes]
rs6897783	0.99[ASN][1000 genomes]
rs6898923	0.99[ASN][1000 genomes]
rs6899251	0.99[ASN][1000 genomes]
rs7701607	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7702879	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7718717	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs953740	ZFP2	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178331200	Weak transcription	Pancreas	Pancrea
2	chr5:178323600-178332800	Weak transcription	Left Ventricle	heart
3	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:178323800-178329800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:178323800-178331000	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:178323800-178332800	Weak transcription	Placenta	Placenta
7	chr5:178323800-178332800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
10	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:178324000-178332800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:178324000-178332800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:178325800-178332800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:178328000-178330400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:178328000-178330400	ZNF genes & repeats	Fetal Lung	lung
16	chr5:178328000-178334400	Weak transcription	Psoas Muscle	Psoas
17	chr5:178328200-178330200	ZNF genes & repeats	Liver	Liver
18	chr5:178328600-178331200	Weak transcription	Aorta	Aorta
19	chr5:178328600-178332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:178328600-178332800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:178328600-178332800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:178328600-178332800	Weak transcription	Brain Substantia Nigra	brain
23	chr5:178328600-178332800	Weak transcription	Gastric	stomach
24	chr5:178328800-178332800	Weak transcription	Ovary	ovary
25	chr5:178329600-178332800	Weak transcription	Brain Inferior Temporal Lobe	brain

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