Variant report

Variant	rs13362873
Chromosome Location	chr8:10015742-10015743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10095187	1.00[EUR][1000 genomes]
rs10104376	1.00[EUR][1000 genomes]
rs10107815	1.00[EUR][1000 genomes]
rs12334619	1.00[EUR][1000 genomes]
rs17151175	1.00[EUR][1000 genomes]
rs17151195	1.00[EUR][1000 genomes]
rs17151325	1.00[EUR][1000 genomes]
rs28595664	1.00[EUR][1000 genomes]
rs28674018	1.00[EUR][1000 genomes]
rs58766320	1.00[AMR][1000 genomes]
rs59673624	1.00[AMR][1000 genomes]
rs60515866	1.00[EUR][1000 genomes]
rs6984706	1.00[EUR][1000 genomes]
rs6999817	1.00[EUR][1000 genomes]
rs73530939	1.00[EUR][1000 genomes]
rs73662805	1.00[EUR][1000 genomes]
rs73662813	1.00[AMR][1000 genomes]
rs9329217	1.00[EUR][1000 genomes]
rs9657534	1.00[EUR][1000 genomes]
rs9657537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
2	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:10003400-10026600	Weak transcription	Liver	Liver
4	chr8:10008200-10021400	Weak transcription	Fetal Brain Female	brain
5	chr8:10008800-10016600	Weak transcription	Fetal Brain Male	brain
6	chr8:10008800-10018400	Weak transcription	Brain Germinal Matrix	brain
7	chr8:10011000-10015800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:10011000-10019200	Weak transcription	Left Ventricle	heart
9	chr8:10011000-10023800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:10015200-10015800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10015400-10016200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links