Variant report

Variant	rs1336534
Chromosome Location	chr6:133753825-133753826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1012605	0.97[EUR][1000 genomes]
rs1889946	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1926090	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1932748	0.94[ASN][1000 genomes]
rs6899927	0.80[EUR][1000 genomes]
rs6907872	0.87[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs760861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385647	0.81[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1336534	MAP3K5	cis	parietal	SCAN
rs1336534	SNORD101	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
3	chr6:133752000-133754000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:133752200-133754000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:133752200-133754200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:133752200-133754200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:133752400-133754200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:133752400-133754400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:133752400-133754400	Weak transcription	Psoas Muscle	Psoas
10	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:133752600-133754000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:133752600-133754000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:133753200-133754000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:133753200-133754000	Enhancers	Adipose Nuclei	Adipose
15	chr6:133753200-133754000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:133753200-133754200	Enhancers	HSMMtube	muscle
17	chr6:133753400-133754000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:133753600-133754000	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr6:133753600-133754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:133753600-133755800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:133753600-133756400	Weak transcription	Left Ventricle	heart
22	chr6:133753600-133756400	Weak transcription	Right Atrium	heart
23	chr6:133753800-133754000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr6:133753800-133754200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:133753800-133754800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:133753800-133757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:133753800-133757800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:133753800-133758000	Enhancers	Skeletal Muscle Female	skeletal muscle

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